PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008198.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 368aa    MW: 38227 Da    PI: 4.8633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008198.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.3e-12183225754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Do008198.1 183 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 225
                 79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-17179243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-14182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9182225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-16183239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-13183229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDGSAAGKTD EIAGGGGAAG DWTSYLSSDG MGSGSFPLFP FARDALSTQP SASLLLSMDT  60
ASLFDLHGAF APPSSATGGA GGSALPAFHD FTSNNPFDDP GHFLAAPPPE HQEQKGGSLA  120
AAPAAPAFGM DWDDEEEIDH SVDGSMAISA SMENAAGAAT GGGSGGGGSG KGKKKGLPAK  180
NLMAERRRRK KLNDRLYMLR SVVPKISKMD RASILGDAIE YLKELLQRIN ELHNEIESAP  240
SSSLVGPTSA SFHPSTPTLQ TFPGQVKEEL CPAAFPTPNG QQATVEVRIR EGHAINIHMF  300
CACKPGILLS TMTALDSLGL DIEQAVISCF NGFAMDVFRA EQCGDGPGLV PDEIKAVLMH  360
TVGLHNAM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172190KKKGLPAKNLMAERRRRKK
2184191ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971151.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE22e-99ICE1_ARATH; Transcription factor ICE1
TrEMBLK3XJ010.0K3XJ01_SETIT; Uncharacterized protein
STRINGSi001874m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-99bHLH family protein